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A collection of bash scripts for a virtual screening pipeline: from compound library generation to docking score evaluation

Abstract: This resource includes five bash scripts designed to simplify and automate key stages of a virtual screening pipeline, making molecular docking more accessible to non-experts. The scripts facilitate compound library preparation, receptor setup, automated docking, job resumption, and docking result analysis, using tools such as QuickVina 2 (AutoDock Vina), OpenBabel, AutoDockTools and fpocket.

 Year of publication: 2025

 DOI: 10.5281/zenodo.15577778

 Full citation: Barbosa Pereira, P. J., Ripoll-Rozada, J., Macedo-Ribeiro, S., Antonio Manso, J.. A collection of bash scripts for a virtual screening pipeline: from compound library generation to docking score evaluation (Versión 1). Zenodo. https://doi.org/10.5281/zenodo.15577778

Authorship

BARBOSA PEREIRA, PEDRO JOSÉ

MACEDO-RIBEIRO, SANDRA

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