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Identification of hypermucoviscous Klebsiella pneumoniae K1, K2, K54 and K57 capsular serotypes by Raman spectroscopy

Abstract: Antimicrobial resistance poses a significant challenge in modern medicine, affecting public health. Klebsiella pneumoniae infections compound this issue due to their broad range of infections and the emergence of multiple antibiotic resistance mechanisms. Efficient detection of its capsular serotypes is crucial for immediate patient treatment, epidemiological tracking and outbreak containment. Current methods have limitations that can delay interventions and increase the risk of morbidity and mortality. Raman spectroscopy is a promising alternative to identify capsular serotypes in hypermucoviscous K. pneumoniae isolates. It provides rapid and in situ measurements with minimal sample preparation. Moreover, its combination with machine learning tools demonstrates high accuracy and reproducibility. This study analyzed the viability of combining Raman spectroscopy with one-dimensional convolutional neural networks (1-D CNN) to classify four capsular serotypes of hypermucoviscous K. pneumoniae: K1, K2, K54 and K57. Our approach involved identifying the most relevant Raman features for classification to prevent overfitting in the training models. Simplifying the dataset to essential information maintains accuracy and reduces computational costs and training time. Capsular serotypes were classified with 96 % accuracy using less than 30 Raman features out of 2400 contained in each spectrum. To validate our methodology, we expanded the dataset to include both hypermucoviscous and non-mucoid isolates and distinguished between them. This resulted in an accuracy rate of 94 %. The results obtained have significant potential for practical healthcare applications, especially for enabling the prompt prescription of the appropriate antibiotic treatment against infections.

 Autoría: Fernández-Manteca M.G., Ocampo-Sosa A.A., Vecilla D.F., Ruiz M.S., Roiz M.P., Madrazo F., Rodríguez-Grande J., Calvo-Montes J., Rodríguez-Cobo L., López-Higuera J.M., Fariñas M.C., Cobo A.,

 Fuente: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2024, 319, 124533

 Editorial: Elsevier

 Fecha de publicación: 15/10/2024

 Nº de páginas: 12

 Tipo de publicación: Artículo de Revista

 DOI: 10.1016/j.saa.2024.124533

 ISSN: 1386-1425

 Proyecto español: PID2022-137269OB-C22

 Url de la publicación: https://doi.org/10.1016/j.saa.2024.124533

Autoría

Mª GABRIELA FERNANDEZ MANTECA

ALAIN ANTONIO OCAMPO SOSA

FERNÁNDEZ VECILLA, DOMINGO

MARIA SILLER RUIZ

PÍA ROIZ, MARÍA

MADRAZO, FIDEL

JORGE RODRIGUEZ GRANDE

JORGE CALVO MONTES

LUIS RODRIGUEZ COBO